How do I run my Python Notebook through Slurm?

First step is to convert your .ipynb (Interactive Python Notebook) file into a regular .py python file. There are two ways to do this.

1. nbconvert

nbconvert is a tool used to convert notebooks to other formats, it is accessible through the command line if you are logged in through Jupyter.

module load JupyterLab/4.5.6-GCCcore-12.3.0
jupyter nbconvert --to script my_notebook.ipynb

will create a new python script called my_notebook.py.

2. Export Notebook

With your notebook open, select File -> Save and Export Notebook As... -> Executable Script

This option might be less convenient as the exporter saves the python file to your local computer, meaning you will have to drag it back into the file explorer in Jupyter from your downloads folder.

This script can then be run as a regular python script.